PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009802970.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 192aa    MW: 22055.4 Da    PI: 8.7927
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009802970.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.46.8e-121857443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     +k+   v  s+ ++ + KKA+E+S+LC++e+a++ifs  
  XP_009802970.1 18 RDKRAEVVAISNMQKSLCKKAKEISILCGIEIAILIFSII 57
                    6778888999***************************965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-4166IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.213767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-13978IPR002100Transcription factor, MADS-box
PfamPF003194.5E-91861IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-52944IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-54465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MERNSSQIRK NVERDFVRDK RAEVVAISNM QKSLCKKAKE ISILCGIEIA ILIFSIIGQP  60
FLFGSPNVES VVRRFLKAKQ PIASPLSGYI SYERISGRKR KEEMDKKKKK VEENKDKEKA  120
LESIFTYCPS EDFNLTDLEK FEKLDQNIKK LSNYLIEEIA QLQFVNDAED PNLALEMNVT  180
SSSTLPSNWL SL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802970.11e-137PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLM1DEI35e-50M1DEI3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000877671e-49(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-13AGAMOUS-like 29